Examples

Download the examples here and extract the zip file.

First, change the current working directory to the examples folder:

cd examples

Then for the HoTP system, MscL:

drsip membrane 2oar_static_marked.pdb 2oar_mobile_marked.pdb "17-46, 69-93" MscL_54000_ZDOCK.out -d MscL_FRET_Data.txt -o MscL/DRSIP_results.csv -p MscL/

where “17-46, 69-93” are the 2 transmembrane helices assigned by OPM. The results table and top 20 complexes will be written into the MscL folder.

While, MscL_FRET_Data.txt contains:

A   40  B   40  5.033146272
B   25  A   25  4.528073406
...

As for the soluble system, Syt1-SNARE:

drsip soluble 5ccg_SNARE_marked.pdb 2r83_aligned_domains_marked.pdb Syt1-SNARE_ZDOCK_54000.out Syt1-SNARE_FRET_Data.txt -o Syt1_SNARE/DRSIP_results.csv -p Syt1_SNARE/

The results table and the top 20 poses will be written into the Syt1_SNARE folder.

See the MscL_ref and Syt1_SNARE_ref folders for the pre-computed results.